Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora

<p>Abstract</p> <p>Background</p> <p>An open, focal issue in evolutionary biology is how reproductive isolation and speciation are initiated; elucidation of mechanisms with empirical evidence has lagged behind theory. Under ecological speciation, reproductive isolation between populations is predicted to evolve incidentally as a by-product of adaptation to divergent environments. The increased genetic diversity associated with interspecific hybridization has also been theorized to promote the development of reproductive isolation among independent populations. Using the fungal model <it>Neurospora</it>, we founded experimental lineages from both intra- and interspecific crosses, and evolved them in one of two sub-optimal, selective environments. We then measured the influence that initial genetic diversity and the direction of selection (parallel versus divergent) had on the evolution of reproductive isolation.</p> <p>Results</p> <p>When assayed in the selective environment in which they were evolved, lineages typically had greater asexual fitness than the progenitors and the lineages that were evolved in the alternate, selective environment. Assays for reproductive isolation showed that matings between lineages that were adapted to the same environment had greater sexual reproductive success than matings between lineages that were adapted to different environments. Evidence of this differential reproductive success was observed at two stages of the sexual cycle. For one of the two observed incompatibility phenotypes, results from genetic analyses were consistent with a two-locus, two-allele model with asymmetric (gender-specific), antagonistic epistasis. The effects of divergent adaptation on reproductive isolation were more pronounced for populations with greater initial genetic variation.</p> <p>Conclusion</p> <p>Divergent selection resulted in divergent adaptation and environmental specialization, consistent with fixation of different alleles in different environments. When brought together by mating, these alleles interacted negatively and had detrimental effects on sexual reproductive success, in agreement with the Dobzhansky-Muller model of genetic incompatibilities. As predicted by ecological speciation, greater reproductive isolation was observed among divergent-adapted lineages than among parallel-adapted lineages. These results support that, given adequate standing genetic variation, divergent adaptation can indirectly cause the evolution of reproductive isolation, and eventually lead to speciation.</p

Enabling Factor Analysis on Thousand-Subject Neuroimaging Datasets

The scale of functional magnetic resonance image data is rapidly increasing as large multi-subject datasets are becoming widely available and high-resolution scanners are adopted. The inherent low-dimensionality of the information in this data has led neuroscientists to consider factor analysis methods to extract and analyze the underlying brain activity. In this work, we consider two recent multi-subject factor analysis methods: the Shared Response Model and Hierarchical Topographic Factor Analysis. We perform analytical, algorithmic, and code optimization to enable multi-node parallel implementations to scale. Single-node improvements result in 99x and 1812x speedups on these two methods, and enables the processing of larger datasets. Our distributed implementations show strong scaling of 3.3x and 5.5x respectively with 20 nodes on real datasets. We also demonstrate weak scaling on a synthetic dataset with 1024 subjects, on up to 1024 nodes and 32,768 cores

The relationship of alignment hyperacuity to stereopsis

Human ability to monocularly detect spatial misalignment is functionally more precise than predicted by the diameter of one foveal cone. The spatial thresholds for vernier alignment are approximately 8 to 13 arc seconds of visual angle, which is more sensitive than expected. Although threshold stereopsis (another hyperacuity) seems to be approximately double alignment hyperacuity values, studies have not conclusively shown a definite relationship to ex1st. Additionally, these measurements have not been widely tested in clinical settings. This study examines the correlation between threshold stereoacuity and the monocular alignment hyperacuity measures. Twenty six subjects were evaluated measuring threshold stereopsis with the Mentor BVAT II Visual Acuity Tester and monocular alignment hyperacuity with software designed at Pacific University College of Optometry. This study supports a relationship of sum of one standard deviation of hyperacuity data distributed for each eye with stereopsis. However, the relationship is not statistically significant, most likely due to the lack of testing precision and variability in individual performance, specifically in binocular function and appreciation of stereopsis. Increased knowledge in the areas of monocular alignment hyperacuity and threshold stereopsis may aid optometric practitioners to better understand how these two factors play a role in such clinical conditions as unexplained asthenopia, amblyopia, strabismus and stereoacuity potential. However, clinical testing of an individual patient would not seem appropriate with this testing paradigm

A Chandra Study: Are Dwarf Carbon Stars Spun Up and Rejuvenated by Mass Transfer?

Carbon stars (with C/O> 1) were long assumed to all be giants, because only AGB stars dredge up significant carbon into their atmospheres. The case is nearly iron-clad now that the formerly mysterious dwarf carbon (dC) stars are actually far more common than C giants, and have accreted carbon-rich material from a former AGB companion, yielding a white dwarf and a dC star that has gained both significant mass and angular momentum. Some such dC systems have undergone a planetary nebula phase, and some may evolve to become CH, CEMP, or Ba giants. Recent studies indicate that most dCs are likely from older, metal-poor kinematic populations. Given the well-known anti-correlation of age and activity, dCs would not be expected to show significant X-ray emission related to coronal activity. However, accretion spin-up might be expected to rejuvenate magnetic dynamos in these post mass-transfer binary systems. We describe our Chandra pilot study of six dCs selected from the SDSS for Halpha emission and/or a hot white dwarf companion, to test whether their X-ray emission strength and spectral properties are consistent with a rejuvenated dynamo. We detect all 6 dCs in the sample, which have X-ray luminosities ranging from logLx= 28.5 - 29.7, preliminary evidence that dCs may be active at a level consistent with stars that have short rotation periods of several days or less. More definitive results require a sample of typical dCs with deeper X-ray observations to better constrain their plasma temperatures.Comment: 13 pages, 5 figures. Revised and resubmitted June 20, accepted June 21, 2019 to Ap

Common Representation of Information Flows for Dynamic Coalitions

We propose a formal foundation for reasoning about access control policies within a Dynamic Coalition, defining an abstraction over existing access control models and providing mechanisms for translation of those models into information-flow domain. The abstracted information-flow domain model, called a Common Representation, can then be used for defining a way to control the evolution of Dynamic Coalitions with respect to information flow

High Failure Rates of Concomitant Periprosthetic Joint Infection and Extensor Mechanism Disruption

Background Patients presenting with both chronic periprosthetic joint infection (PJI) and extensor mechanism disruption (EMD) pose a significant challenge. As there is little in the literature regarding outcomes of patients with concomitant PJI and EMD, we performed a multicenter study to evaluate the outcomes. Methods Sixty patients with concomitant diagnoses of PJI and EMD were evaluated from 5 institutions. Patient demographics, presentation type, surgical management, and outcomes including recurrent infections, final surgery, and ambulatory status were documented. Results Fifty-three of 60 patients had an attempted extensor mechanism reconstruction/repair (EMR) of which 12 (23%) were successful, averaging 3.5 (range, 2-7) intervening surgeries. Forty-one patients (77%) were considered failures with recurrence of infection as most common failure (80%); 26 ended in fusion, 10 in above knee amputation, 3 with chronic resection arthroplasty, and 2 with chronic spacers/EMD. Seven patients had no attempt at EMR but proceeded directly to fusion (n = 6) or amputation (n = 1). There was no statistical difference between groups that had success or failure of EMR in age, American Society of Anesthesiologists Physical Status Classification System, or body mass index. Conclusion Our study demonstrates that concomitant EMD and PJI is a dreaded combination with poor outcomes regardless of treatment. Eradication of infection and reconstruction of the extensor mechanism often require numerous surgeries and despite great effort often end in failure. Consideration of early fusion or amputation may be preferable in some patients to avoid the morbidity and mortality of repeated surgeries

A molecular map of mesenchymal tumors

BACKGROUND: Bone and soft tissue tumors represent a diverse group of neoplasms thought to derive from cells of the mesenchyme or neural crest. Histological diagnosis is challenging due to the poor or heterogenous differentiation of many tumors, resulting in uncertainty over prognosis and appropriate therapy. RESULTS: We have undertaken a broad and comprehensive study of the gene expression profile of 96 tumors with representatives of all mesenchymal tissues, including several problem diagnostic groups. Using machine learning methods adapted to this problem we identify molecular fingerprints for most tumors, which are pathognomonic (decisive) and biologically revealing. CONCLUSION: We demonstrate the utility of gene expression profiles and machine learning for a complex clinical problem, and identify putative origins for certain mesenchymal tumors

Telecare motivational interviewing for diabetes patient education and support : a randomised controlled trial based in primary care comparing nurse and peer supporter delivery

Background: There is increasing interest in developing peer-led and 'expert patient'-type interventions, particularly to meet the support and informational needs of those with long term conditions, leading to improved clinical outcomes, and pressure relief on mainstream health services. There is also increasing interest in telephone support, due to its greater accessibility and potential availability than face to face provided support. The evidence base for peer telephone interventions is relatively weak, although such services are widely available as support lines provided by user groups and other charitable services. Methods/Design: In a 3-arm RCT, participants are allocated to either an intervention group with Telecare service provided by a Diabetes Specialist Nurse (DSN), an intervention group with service provided by a peer supporter (also living with diabetes), or a control group receiving routine care only. All supporters underwent a 2-day training in motivational interviewing, empowerment and active listening skills to provide telephone support over a period of up to 6 months to adults with poorly controlled type 2 diabetes who had been recommended a change in diabetes management (i.e. medication and/or lifestyle changes) by their general practitioner (GP). The primary outcome is self-efficacy; secondary outcomes include HbA1c, total and HDL cholesterol, blood pressure, body mass index, and adherence to treatment. 375 participants (125 in each arm) were sought from GP practices across West Midlands, to detect a difference in self-efficacy scores with an effect size of 0.35, 80% power, and 5% significance level. Adults living with type 2 diabetes, with an HbA1c > 8% and not taking insulin were initially eligible. A protocol change 10 months into the recruitment resulted in a change of eligibility by reducing HbA1c to > 7.4%. Several qualitative studies are being conducted alongside the main RCT to describe patient, telecare supporter and practice nurse experience of the trial. Discussion and implications of the research: With its focus on self-management and telephone peer support, the intervention being trialled has the potential to support improved self-efficacy and patient experience, improved clinical outcomes and a reduction in diabetes-related complications